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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
BLCA rs11665422 chr18:67788395 A/G SMAD4 chr18:48554764-48611415:+ 0.75 6.5 2.44E-10 Box Plot
BLCA rs11665422 chr18:67788395 A/G TMX3 chr18:66340925-66382535:- 0.79 6.35 5.93E-10 Box Plot
BLCA rs11665422 chr18:67788395 A/G TXNL1 chr18:54264439-54318831:- 0.81 6.22 1.27E-9 Box Plot
BLCA rs11665422 chr18:67788395 A/G TXNL4A chr18:77730811-77793949:- 0.78 7.04 9.07E-12 Box Plot
BLCA rs11665422 chr18:67788395 A/G VPS4B chr18:61056423-61089716:- 0.63 6.01 4.27E-9 Box Plot
BLCA rs11665422 chr18:67788395 A/G ZADH2 chr18:72907063-72921303:- 0.83 6.73 6.18E-11 Box Plot
BLCA rs116771909 chr2:188663115 C/G NME3 chr16:1820287-1821731:- -0.6 -6.17 1.73E-9 Box Plot
BLCA rs11678366 chr2:6776803 G/A FGF3 chr11:69624992-69633792:- 0.42 6.07 3.15E-9 Box Plot
BLCA rs11680692 chr2:101062572 T/A LOC285359 chr3:101431278-101432259:+ 0.34 6.27 9.77E-10 Box Plot
BLCA rs11688392 chr2:6770204 C/G FGF3 chr11:69624992-69633792:- 0.47 6.61 1.3E-10 Box Plot
BLCA rs11690911 chr2:101110101 A/G LOC285359 chr3:101431278-101432259:+ 0.34 6.1 2.64E-9 Box Plot
BLCA rs11691511 chr2:30541704 C/T LIG3 chr17:33307513-33336762:+ -0.32 -6.06 3.26E-9 Box Plot
BLCA rs11692570 chr2:6777992 C/T FGF3 chr11:69624992-69633792:- 0.42 6.04 3.64E-9 Box Plot
BLCA rs116943168 chr21:47228172 G/A HMX1 chr4:8847802-8873543:- 0.39 6.24 1.19E-9 Box Plot
BLCA rs11694697 chr2:6773920 A/G FGF3 chr11:69624992-69633792:- -0.45 -6.4 4.66E-10 Box Plot